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https://cran.r-project.org/web/packages/BiDAG
BiDAG: Bayesian Inference for Directed Acyclic Graphs
Implementation of a collection of MCMC methods for Bayesian structure learning of directed acyclic graphs (DAGs), both from continuous and discrete data. For efficient inference on larger DAGs, the space of DAGs is pruned a...
https://cran.r-project.org/web/packages/chromoMap
chromoMap: Interactive Genomic Visualization of Biological Data
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. ...
https://cran.r-project.org/web/packages/IGoRRR
IGoRRR: A Shiny Interface for Simple Data Management
Launches a shiny application generating code to view tables in several ways, import/export tables, modify tables, make some basic graphics. 'IGoR' is a graphic user interface designed to help beginners using simple fu...
https://cran.r-project.org/web/packages/SmallCountRounding
SmallCountRounding: Small Count Rounding of Tabular Data
A statistical disclosure control tool to protect frequency tables in cases where small values are sensitive. The function PLSrounding() performs small count rounding of necessary inner cells so that all small frequencies of c...
https://cran.r-project.org/web/packages/cnum
cnum: Chinese Numerals Processing
Chinese numerals processing in R, such as conversion between Chinese numerals and Arabic numerals as well as detection and extraction of Chinese numerals in character objects and string. This package supports the casual sc...
https://cran.r-project.org/web/packages/saros
saros: Semi-Automatic Reporting of Ordinary Surveys
Produces highly customized reports, primarily intended for survey research. Building on 'Quarto' (
), it generates draft chapters of all specified dependent/independent variables, which can be further ed...
https://cran.r-project.org/web/packages/inTextSummaryTable
inTextSummaryTable: Creation of in-Text Summary Table
Creation of tables of summary statistics or counts for clinical data (for 'TLFs'). These tables can be exported as in-text table (with the 'flextable' package) for a Clinical Study Report (Word format) or a 'topline' presen...
https://cran.r-project.org/web/packages/bread
bread: Analyze Big Files Without Loading Them in Memory
A simple set of wrapper functions for data.table::fread() that allows subsetting or filtering rows and selecting columns of table-formatted files too large for the available RAM. 'b stands for 'big files'. bread makes heav...
https://cran.r-project.org/web/packages/reactablefmtr
reactablefmtr: Streamlined Table Styling and Formatting for Reactable
Provides various features to streamline and enhance the styling of interactive reactable tables with easy-to-use and highly-customizable functions and themes. Apply conditional formatting to cells with data bars, color scal...
https://cran.r-project.org/web/packages/moodleR
moodleR: Helper Functions to Work with 'Moodle' Data
A collection of functions to connect to a 'Moodle' database, cache relevant tables locally and generate learning analytics. 'Moodle' is an open source Learning Management System (LMS) developed by MoodleHQ. For more informat...
https://cran.r-project.org/web/packages/TouRnament
TouRnament: Tools for Sports Competitions
Contains two functions related to sports competitions. One to create league tables and one to create a match schedule....
https://cran.r-project.org/web/packages/obcost
obcost: Obesity Cost Database
This database contains necessary data relevant to medical costs on obesity throughout the United States. This database, in form of an R package, could output necessary data frames relevant to obesity costs, where the clients ...
https://cran.r-project.org/web/packages/tatoo
tatoo: Combine and Export Data Frames
Functions to combine data.frames in ways that require additional effort in base R, and to add metadata (id, title, ...) that can be used for printing and xlsx export. The 'Tatoo_report' class is provided as a convenient he...
https://cran.r-project.org/web/packages/rtables.officer
rtables.officer: Exporting Tools for 'rtables'
Designed to create and display complex tables with R, the 'rtables' R package allows cells in an 'rtables' object to contain any high-dimensional data structure, which can then be displayed with cell-specific formatting instr...
https://cran.r-project.org/web/packages/RulesTools
RulesTools: Preparing, Analyzing, and Visualizing Association Rules
Streamlines data preprocessing, analysis, and visualization for association rule mining. Designed to work with the 'arules' package, features include discretizing data frames, generating rule set intersections, and visualizin...
https://cran.r-project.org/web/packages/terminaldigits
terminaldigits: Tests of Uniformity and Independence for Terminal Digits
Implements simulated tests for the hypothesis that terminal digits are uniformly distributed (chi-squared goodness-of-fit) and the hypothesis that terminal digits are independent from preceding digits (several tests of indepe...
https://cran.r-project.org/web/packages/reactable
reactable: Interactive Data Tables for R
Interactive data tables for R, based on the 'React Table' JavaScript library. Provides an HTML widget that can be used in 'R Markdown' or 'Quarto' documents, 'Shiny' applications, or viewed from an R console....
https://cran.r-project.org/web/packages/gggenes
gggenes: Draw Gene Arrow Maps in 'ggplot2'
A 'ggplot2' extension for drawing gene arrow maps....
https://cran.r-project.org/web/packages/confreq
confreq: Configural Frequencies Analysis Using Log-Linear Modeling
Offers several functions for Configural Frequencies Analysis (CFA), which is a useful statistical tool for the analysis of multiway contingency tables. CFA was introduced by G. A. Lienert as 'Konfigurations Frequenz Analys...
https://cran.r-project.org/web/packages/hgutils
hgutils: Collection of Utility Functions
A handy collection of utility functions designed to aid in package development, plotting and scientific research. Package development functionalities includes among others tools such as cross-referencing package imports...
https://cran.r-project.org/web/packages/net4pg
net4pg: Handle Ambiguity of Protein Identifications from Shotgun Proteomics
In shotgun proteomics, shared peptides (i.e., peptides that might originate from different proteins sharing homology, from different proteoforms due to alternative mRNA splicing, post-translational modifications, proteolyt...
https://cran.r-project.org/web/packages/changepoints
changepoints: A Collection of Change-Point Detection Methods
Performs a series of offline and/or online change-point detection algorithms for 1) univariate mean:
,
; 2) univariate polynomials:
; 3) univariate and multiva...
https://cran.r-project.org/web/packages/questionr
questionr: Functions to Make Surveys Processing Easier
Set of functions to make the processing and analysis of surveys easier : interactive shiny apps and addins for data recoding, contingency tables, dataset metadata handling, and several convenience functions....
https://cran.r-project.org/web/packages/cyclotomic
cyclotomic: The Field of Cyclotomic Numbers
The cyclotomic numbers are complex numbers that can be thought of as the rational numbers extended with the roots of unity. They are represented exactly, enabling exact computations. They contain the Gaussian rationals (co...
https://cran.r-project.org/web/packages/robCompositions
robCompositions: Compositional Data Analysis
Methods for analysis of compositional data including robust methods (
), imputation of missing values (
), methods to replace rounded zeros (
https://cran.r-project.org/web/packages/rviewgraph
rviewgraph: Animated Graph Layout Viewer
Provides 'Java' graphical user interfaces for viewing, manipulating and plotting graphs. Graphs may be directed or undirected....
https://cran.r-project.org/web/packages/SeuratObject
SeuratObject: Data Structures for Single Cell Data
Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-nativ...
https://cran.r-project.org/web/packages/seqminer
seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statisti...
https://cran.r-project.org/web/packages/OmicNavigator
OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization
A tool for interactive exploration of the results from 'omics' experiments to facilitate novel discoveries from high-throughput biology. The software includes R functions for the 'bioinformatician' to deposit study metad...
https://cran.r-project.org/web/packages/spectralGraphTopology
spectralGraphTopology: Learning Graphs from Data via Spectral Constraints
In the era of big data and hyperconnectivity, learning high-dimensional structures such as graphs from data has become a prominent task in machine learning and has found applications in many fields such as finance, health car...