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https://cran.r-project.org/web/packages/geospt
geospt: Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
Estimation of the variogram through trimmed mean, radial basis functions (optimization, prediction and cross-validation), summary statistics from cross-validation, pocket plot, and design of optimal sampling networks throu...
https://cran.r-project.org/web/packages/VCA
VCA: Variance Component Analysis
ANOVA and REML estimation of linear mixed models is implemented, once following Searle et al. (1991, ANOVA for unbalanced data), once making use of the 'lme4' package. The primary objective of this package is to perform a v...
https://cran.r-project.org/web/packages/bipartiteD3
bipartiteD3: Interactive Bipartite Graphs
Generates interactive bipartite graphs using the D3 library. Designed for use with the 'bipartite' analysis package. Sources open source 'viz-js' library Adapted from examples at (released und...
https://cran.r-project.org/web/packages/breakDown
breakDown: Model Agnostic Explainers for Individual Predictions
Model agnostic tool for decomposition of predictions from black boxes. Break Down Table shows contributions of every variable to a final prediction. Break Down Plot presents variable contributions in a concise graphical way...
https://cran.r-project.org/web/packages/FSAtools
FSAtools: Fragment Analysis and Capillary Sequencing Tool Kit
A flexible and interfaced framework for importing, processing and ploting Applied Biosystems data files. Application to Reverse-Transcriptase Multiplex Ligation-dependent Probe Amplification (RT-MLPA) gene-expression profilin...
https://cran.r-project.org/web/packages/unitquantreg
unitquantreg: Parametric Quantile Regression Models for Bounded Data
A collection of parametric quantile regression models for bounded data. At present, the package provides 13 parametric quantile regression models. It can specify regression structure for any quantile and shape parameters. It ...
https://cran.r-project.org/web/packages/httpcode
httpcode: 'HTTP' Status Code Helper
Find and explain the meaning of 'HTTP' status codes. Functions included for searching for codes by full or partial number, by message, and get appropriate dog and cat images for many status codes....
https://cran.r-project.org/web/packages/ggspatial
ggspatial: Spatial Data Framework for ggplot2
Spatial data plus the power of the ggplot2 framework means easier mapping when input data are already in the form of spatial objects....
https://cran.r-project.org/web/packages/EWAScaller
EWAScaller: Query and Analyse the 'EWAS Atlas' Database
Provides a client for the 'EWAS Atlas' web services (<https://ngdc.cncb.ac.cn/ewas/>; Li et al. (2019) <
https://cran.r-project.org/web/packages/UnalR
UnalR: Una implementación de funciones de uso interno
Una herramienta rápida y consistente para la disposición de microdatos y la visualización de las cifras y estadísticas oficiales de la Universidad Nacional de Colombia <https...
https://cran.r-project.org/web/packages/sjtable2df
sjtable2df: Convert 'sjPlot' HTML-Tables to R 'data.frame'
A small set of helper functions to convert 'sjPlot' HTML-tables to R data.frame objects / knitr::kable-tables....
https://cran.r-project.org/web/packages/ggchord
ggchord: Multi-Sequence 'BLAST' Alignment Chord Diagram Visualization Tool
A function built on 'ggplot2' that visualizes pairwise 'BLAST' alignment results as chord diagrams, intuitively displaying homologous regions between query and subject sequences....
https://cran.r-project.org/web/packages/ggtrendline
ggtrendline: Add Trendline and Confidence Interval to 'ggplot'
Add trendline and confidence interval of linear or nonlinear regression model and show equation to 'ggplot' as simple as possible. For a general overview of the methods used in this package, see Ritz and Streibig (2008)
https://cran.r-project.org/web/packages/SemNeT
SemNeT: Methods and Measures for Semantic Network Analysis
Implements several functions for the analysis of semantic networks including different network estimation algorithms, partial node bootstrapping (Kenett, Anaki, & Faust, 2014 ), random walk simul...
https://cran.r-project.org/web/packages/EIX
EIX: Explain Interactions in 'XGBoost'
Structure mining from 'XGBoost' and 'LightGBM' models. Key functionalities of this package cover: visualisation of tree-based ensembles models, identification of interactions, measuring of variable importance, measuring of...
https://cran.r-project.org/web/packages/irtsim
irtsim: Monte Carlo Simulation-Based Sample-Size Planning for Item Response Theory
Provides a pipeline application programming interface (API) for Monte Carlo simulation-based sample-size planning in item response theory (IRT). Implements the 10-decision framework from Schroeders and Gnambs (2025) <
https://cran.r-project.org/web/packages/modelROC
modelROC: Model Based ROC Analysis
The ROC curve method is one of the most important and commonly usedmethods for model accuracy assessment which is one of the most important elementsof model evaluation.The modelROC package is a model-based ROC assessment tool...
https://cran.r-project.org/web/packages/chess2plyrs
chess2plyrs: Chess Game Creation and Tools
A chess program which allows the user to create a game, add moves, check for legal moves and game result, plot the board, take back, read and write FEN (Forsyth–Edwards Notation). A basic chess engine based on minimax is ...
https://cran.r-project.org/web/packages/Unitary
Unitary: Quantum Simulator
Provides a comprehensive toolkit for quantum computing simulation and visualization within the R environment. The package enables users to initialize qubit states, construct custom quantum gates with both unitary transformati...
https://cran.r-project.org/web/packages/GLBFP
GLBFP: General Linear Blend Frequency Polygon Density Estimation
Implements nonparametric density estimation with Averaged Shifted Histogram (ASH), Linear Blend Frequency Polygon (LBFP), and General Linear Blend Frequency Polygon (GLBFP) estimators. The package provides pointwise and grid-...
https://cran.r-project.org/web/packages/add2ggplot
add2ggplot: Add to 'ggplot2'
Create 'ggplot2' themes and color palettes....
https://cran.r-project.org/web/packages/graphonmix
graphonmix: Generates Mixture Graphs from Dense and Sparse Graphons
Generates (U,W) mixture graphs where U is a line graph graphon and W is a dense graphon. Graphons are graph limits and graphon U can be written as sequence of positive numbers adding to 1. Graphs are sampled from U and W and ...
https://cran.r-project.org/web/packages/CopulaCenR
CopulaCenR: Copula-Based Regression Models for Multivariate Censored Data
Copula-based regression models for multivariate censored data, including bivariate right-censored data, bivariate interval-censored data, and right/interval-censored semi-competing risks data. Currently supports Clayton, Gu...
https://cran.r-project.org/web/packages/spacejamr
spacejamr: Simulate Spatial Bernoulli Networks
Social network analysis is becoming commonplace in many social science disciplines, but access to useful network data, especially among marginalized populations, still remains a formidable challenge. This package mitigates...
https://cran.r-project.org/web/packages/mmodely
mmodely: Modeling Multivariate Origins Determinants - Evolutionary Lineages in Ecology
Perform multivariate modeling of evolved traits, with special attention to understanding the interplay of the multi-factorial determinants of their origins in complex ecological settings (Stephens, 2007
https://cran.r-project.org/web/packages/pplot
pplot: Chronological and Ordered p-Plots for Empirical Data
Generates chronological and ordered p-plots for data vectors or vectors of p-values. The p-plot visualizes the evolution of the p-value of a significance test across the sampled data. It allows for assessing the consistency o...
https://cran.r-project.org/web/packages/dlim
dlim: Distributed Lag Interaction Model
Collection of functions for fitting and interpreting distributed lag interaction models (DLIM). A DLIM regresses a scalar outcome on repeated measures of exposure and allows for modification by a continuous variable. Includes...
https://cran.r-project.org/web/packages/spatialAtomizeR
spatialAtomizeR: Spatial Analysis with Misaligned Data Using Atom-Based Regression Models
Implements atom-based regression models (ABRM) for analyzing spatially misaligned data. Provides functions for simulating misaligned spatial data, preparing NIMBLE model inputs, running MCMC diagnostics, and comparing diffe...
https://cran.r-project.org/web/packages/caplot
caplot: Correspondence Analysis with Geometric Frequency Interpretation
Performs Correspondence Analysis on the given dataframe and plots the results in a scatterplot that emphasizes the geometric interpretation aspect of the analysis, following Borg-Groenen (2005) and Yelland (2010). It is parti...
https://cran.r-project.org/web/packages/edgebundleR
edgebundleR: Circle Plot with Bundled Edges
Generates interactive circle plots with the nodes around the circumference and linkages between the connected nodes using hierarchical edge bundling via the D3 JavaScript library. See for more informatio...